Introduction

OnClass is a python package for single-cell cell type annotation. It uses the Cell Ontology to capture the cell type similarity. These similarities enable OnClass to annotate cell types that are never seen in the training data.

A preprint of OnClass paper is on bioRxiv All datasets used in OnClass can be found in figshare. Currently, OnClass supports

1. annotate cell type
2. integrating different single-cell datasets based on the Cell Ontology
3. marker genes identification

OnClass is a joint work by Altman lab at stanford and czbiohub.

For questions about the software, please contact Sheng Wang at swang91@uw.edu.

Our web server can be found at: https://onclass.readthedocs.io/.